#acl All:read

= OICR Cancer Stem Cell Program =

== Experimental Design and Statistical Analysis ==

[[ChangjiangXu |ChangJiang Xu]], [[GaryBader | Gary Bader]]

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 * OICR CSC Projects: Biostatistical Part (PI's name and/or project title listed below) 
   * Aaron Schimmer
     * [[CancerStemCellProject/ChangjiangXu/AS02 | AS02 (Some points in the reviewed paper to be addressed): Association between ClpP expression and known AML mutations]]
     * [[CancerStemCellProject/ChangjiangXu/AS03_06 | AS03-06: Gene expression of protein import / the cardiolipin pathway / HTRA2 / MTCH2 in AMLs]]
   * Laurie Ailles
     * [[CancerStemCellProject/ChangjiangXu/LA02 | LA02 (LA02_CAF_ovarian_Laurie): Crosstalk between CAFs and ovarian cancer cells]]
       1. [[CancerStemCellProject/ChangjiangXu/LA02#Differential_Expression_Analysis | Differential expression analysis]]
       1. [[CancerStemCellProject/ChangjiangXu/LA02#TCGA_OV_Data_Analysis | TCGA OV data analysis]]
   * Peter Dirks
     * [[CancerStemCellProject/ChangjiangXu/PD03 | PD03: Role of dopamine D4 receptor in glioblastoma stem cells]]
       1. [[CancerStemCellProject/ChangjiangXu/PD03#PD03-part2:_Normal_Cells | Part2: normal cells]]
       1. [[CancerStemCellProject/ChangjiangXu/PD03#PD03-part3:_TCGA_Glioblastoma_Data_Analysis | Part3: TCGA GBM data analysis]]
       1. [[CancerStemCellProject/ChangjiangXu/PD03#Comparison_of_TCGA_GBM_Affymetrix_and_RNAseq_Data | Comparison of TCGA GBM Affymetrix and RNAseq data]]
   * HALT02/JAK2
     * [[CancerStemCellProject/ChangjiangXu/HALT02_SRC | Differential expression analysis of SRC high vs low (negative) sub-populations]]
     * [[CancerStemCellProject/ChangjiangXu/HALT02_JAK2 | Comparison of the pathways for XG-R/PF-R, XG-NR/PF-NR, and XG-R/PF-NR]]
   * Bret Pearson
     * [[CancerStemCellProject/ChangjiangXu/BP03 | BP03: Spatial Organization of the planarian transcriptome]]
     * [[CancerStemCellProject/ChangjiangXu/BP04 | BP04: Mechanisms driving asymmetric cell fate outcomes in planarian adult stem cell lineages]]
   * [[CancerStemCellProject/ChangjiangXu/CG04 | Cyndi Guidos]]
   * [[CancerStemCellProject/ChangjiangXu/oPOSSUM | oPOSSUM]]


 * [[CSCBiostatService | Biostatistics service]]
   1. [[CSCBiostatService/AffymetrixDataAnalysis | Affymetrix microarray data analysis]]
   1. [[CSCBiostatService/IlluminaChipDataAnalysis | Illumina’s BeadChip microarray data analysis]]
   1. [[CSCBiostatService/RNAseqDataAnalysis | RNA-seq data analysis]]
   1. [[CSCBiostatService/flowCytometryDataAnalysis | Flow cytometry data analysis]]
   1. [[CSCBiostatService/survivalAnalysis | Survival analysis]]

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