Daniele Merico - HowTo Directory
Standard Microarray Analysis:
[:DanieleMerico/HowtoDirectory/AffyCelCalSig: Importing Affymetrix CEL files, calculating MAS5 calls and signals]BR CEL files are the almost-raw files generated after chip image processing by Affymetrix software; BR the "fun" usually starts from CEL files onwards; here's is the simplest things you can do with CEL files.
[:DanieleMerico/HowtoDirectory/ExprSet: Importing Affymetrix CEL files, bothering about the R exprSet object, calculating MAS5 calls and signals]BR if the experimental design is quite complex, or you are using a function requiring an expression set (exprSet),BR then, sorry, but you probably need to read this part instead of the previous one.
Computational Techniques for multi-dimensional data:
- [:DanieleMerico/HowtoDirectory/Distances: A few tips on distances] (especially for binary strings)