#acl All:read <> = Introduction = This is the domain interaction team public wiki page mainly for all members to view the latest schedule, related public resources and news. Members can access other info [[InteractionTeam| here]]. There is a Google group mailing list (interactionTeam@googlegroups.com) for disseminating news and announcements. New members must be invited to join the mailing list but any existing members can initiate an invitation as long as they have a Google account (Simply log into your Google account and access your googlegroup service). = Members = == Present == || '''Name'''||'''Research Project/Interests''' || || Andreas Ernst || || || Chris Tan || Signaling network evolution || || Dev Sidhu || || || David Gfeller || Specificity and robustness in PDZ networks || || Gary Bader || Biological network analysis and pathway information resources || || Nisa Dar || || || Mark Sun || || || Philip Kim || || || Shirley Hui || Domain specificity prediction || || Raffi Tonikian || Protein domain experimental specificity mapping || || Xiaojian Shao || Quantitative interaction prediction || || Xiaofeng Xin || Protein domain interaction experimental mapping || == Alumni == || '''Name'''||'''Research Project/Interests''' || || Ioana Ivan || Membrane interactions with PDZ domains || || Stacy Hung || Protein interaction prediction || || Lianet Lopez ||Protein domain interaction experimental mapping|| || Monica Raj (UBC, Vancouver) || Protein interaction prediction || || Moyez Dharsee || Protein interaction prediction || = Meetings = == Organization == 1. Meeting every 2 weeks, alternating between journal club and Work-in-Progress (WIP) meeting 1. The WIP serves for members to update each other on their latest endeavor or research in a casual setting. However, any member can do a formal representation during WIP to get feedback on their work in a timely manner. == Schedule == * From Nov 2 2009 till end of Dec 2009 '''Time''': Monday, 11.00 am (unless otherwise) '''Place''': CCBR, 6th floor meeting room (unless otherwise) * From 2010 onward '''Time''': Monday, 4.00 pm (unless otherwise) '''Place''': CCBR, 6th floor meeting room (unless otherwise) === 2009 === || '''Date'''||'''Presenter''' || '''Time/Location''' || '''Presentation Title''' || || Nov 2 || Shobhit || || || || Nov 16 || WIP || || || || Nov 30 || X || || || || Dec 14 || ? || || || || Dec 28 || || || || === 2010 === || '''Date'''||'''Presenter''' || '''Time/Location''' || '''Presentation Title''' || || Jan 11 || || || || || Jan 25 || WIP || || || || Feb 8 || Shirley || || || || Feb 22 || WIP || || || || Mar 8 || Xiaojian || || || || Mar 22 || WIP || || || || Apr 5 || Chris || || || || Apr 19 || WIP || || || || May 3 || Shobhit || || || || May 17 || || || || || May 31 || || || || || June 14 || || || || || June 28 || || || || = Meeting Guide = == Journal Club Guide == These are good practices agreed by members 1. 1-2 papers discussed per journal club, related to a specific topic. 1. Paper(s) should be sent out one week before meeting, together with length of expected discussion time e.g. 5,15,30 minutes. Very important papers may take up the entire discussion session, however less important papers should be covered rapidly. 1. Paper(s) selected should be relevant to your own work, and preferably of general interest to members. 1. Include a brief introduction on the paper(s) and why you selected it (e.g. a landmark paper, of general interest, a technological advance, important discoveries, thought-provoking) 1. Summarize the paper at a high level. 1. More information is available at http://baderlab.org/Intranet/JournalClubGuidelines == Chairperson Guide == '''Mission''': To ensure meetings are conducted smoothly. This includes preparing the room (e.g. meeting room, projector, markers) '''''Before Meeting''''' 1. Remind the presenter of the next meeting (that it is her/his turn). 1. Send reminder to team members on date, time and venue of the next coming meeting (especially if there is change in the original schedule). 1. Ensure meeting room is available. CCBR meeting rooms are normally not locked. If not, get the key from Gary (he has keys to all CCBR meeting rooms). If Gary is not around, get the key from administration office at CCBR level 2. 1. Prepare projector if it is needed. Check with Gary. If not, get it from administration office at CCBR level 2. Laptop needed will be prepared by presenter. 1. Ensure markers and whiteboard eraser is available. '''''During Meeting''''' 1. Prepare and introduce agenda. It may be advisable to list "administrative issues" before a presentation or discussion. 1. Keep meeting on track (in term of agenda) 1. Keep meeting to the scheduled duration if time is a constraint 1. Moderate discussion and manage the group dynamics 1. Try not to let one person dominate. Ask for other opinions. If some people are silent, draw them out by asking for their thoughts. 1. Decide when to end debate on each topic. 1. Give a short summary or recap before going on to the next topic. '''''After Meeting''''' 1. Update wiki 1. Return projector == Booking a meeting room in CCBR == 1. The availability of CCBR meeting rooms can be found at http://tdccbr.med.utoronto.ca under "Seminar & Calender" menu. 1. To book a meeting room, email CCBR . Cancel a booking via the same email address. = Resources = == Papers by category == * [[http://www.connotea.org/user/DIT/tag/DomainSpecificityPrediction|Domain/Network Specificity]] * [[http://www.connotea.org/user/DIT/tag/NetworkEvolution|Domain/Network Evolution]] * [[http://www.connotea.org/user/DIT/tag/ProteinInteractionPrediction|Protein Interaction Prediction]] * [[http://www.connotea.org/user/DIT/tag/InteractionData|Experimental methods or data for domain interactions]] * Domain biology: * [[http://www.connotea.org/user/DIT/tag/DomainPDZ|PDZ Domains]] * [[http://www.connotea.org/user/DIT/tag/DomainSH3|SH3 Domains]] * [[http://www.connotea.org/user/DIT/tag/DomainWW|WW Domains]] == Other Groups and Researchers == === Protein Domain Groups/Researchers === * [[http://cbm.bio.uniroma2.it/~manuela/|Manuela Helmer-Citterich]] * [[http://www.uniroma2.it/dottorato/CESARENI.htm|Giovanni Cesareni]]