The PWMs Repository
This page lists the available PWMs and its corresponding data.
Direction for adding PWM's data
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SH3 Domain (Human)
Description and data sources:
- Domains Information (Names, Sequences, Proteins ID ...).
- Positive peptides dataset.
- Negative peptides dataset (experimental).
- Negative peptides dataset (Computational).
SH2 Domain (Human)
Description and data sources: - Data set of human SH2 Domain published in http://www.nature.com/ng/journal/v46/n12/full/ng.3138.html. - The data obtained from the supplementary material of the paper and it descries the domains and the positive and negative peptide datasets used for training the statistical models used in this work. The peptide datasets are mainly obtained from 5 published SH2 studies (cited in the article).
- Domains and peptides Information.
Phosphokinase-Binding Domains (Human)
Description and data sources:
- Domains Information (Names, Sequences, Proteins ID ...).
- Positive peptides dataset.
- Negative peptides dataset (experimental).
- Negative peptides dataset (Computational).
Transcription Factors (Human)
Description and data sources: - Data set of human transcription factor binding sites published in http://www.ncbi.nlm.nih.gov/pubmed/25215497. - Data obtained from CIS-BP database (http://cisbp.ccbr.utoronto.ca/) on October 24, 2014. The data contains >4000 PWM and all the corresponding transcription factor information and logos. - Please note that: many PWMs in this dataset are not completely available due to licence issues.