Examples of Generic Enrichment Result Files

Note: For readability the following examples have been formatted in a way, that the content of each column is properly aligned.
In the actual files, replace each {tab} and it's surrounding SPACE-characters by one TAB-character. The files can be also easily created with any spreadsheet-program (e.g. Excel) and then saved in the "Tab Delimited Text" format.

Example with all possible columns

GO.ID      {tab} Description                     {tab} p.Val {tab} FDR  {tab} Phenotype
GO:0000346 {tab} transcription export complex    {tab} 0.01  {tab} 0.02 {tab} +1
GO:0030904 {tab} retromer complex                {tab} 0.05  {tab} 0.10 {tab} +1
GO:0008623 {tab} chromatin accessibility complex {tab} 0.05  {tab} 0.12 {tab} -1
GO:0046540 {tab} tri-snRNP complex               {tab} 0.01  {tab} 0.03 {tab} -1
...

Example without phenotype column

GO.ID      {tab} Description                     {tab} p.Val {tab} FDR
GO:0000346 {tab} transcription export complex    {tab} 0.01  {tab} 0.02
GO:0030904 {tab} retromer complex                {tab} 0.05  {tab} 0.10
GO:0008623 {tab} chromatin accessibility complex {tab} 0.05  {tab} 0.12
GO:0046540 {tab} tri-snRNP complex               {tab} 0.01  {tab} 0.03
...

Example without FDR and phenotype

GO.ID      {tab} Description                     {tab} p.Val
GO:0000346 {tab} transcription export complex    {tab} 0.01
GO:0030904 {tab} retromer complex                {tab} 0.05
GO:0008623 {tab} chromatin accessibility complex {tab} 0.05
GO:0046540 {tab} tri-snRNP complex               {tab} 0.01
...

Example without FDR but with phenotype

GO.ID      {tab} Description                     {tab} p.Val {tab} {tab} Phenotype
GO:0000346 {tab} transcription export complex    {tab} 0.01  {tab} {tab} +1
GO:0030904 {tab} retromer complex                {tab} 0.05  {tab} {tab} +1
GO:0008623 {tab} chromatin accessibility complex {tab} 0.05  {tab} {tab} -1
GO:0046540 {tab} tri-snRNP complex               {tab} 0.01  {tab} {tab} -1
...

Example without Description, FDR and phenotype

GO.ID      {tab} {tab} p.Val {tab} {tab} Phenotype
GO:0000346 {tab} {tab} 0.01  {tab} {tab} +1
GO:0030904 {tab} {tab} 0.05  {tab} {tab} +1
GO:0008623 {tab} {tab} 0.05  {tab} {tab} -1
GO:0046540 {tab} {tab} 0.01  {tab} {tab} -1
...

Example with dummy-description and without FDR and phenotype

GO.ID      {tab} DESCR {tab} p.Val {tab} {tab} Phenotype
GO:0000346 {tab} NA    {tab} 0.01  {tab} {tab} +1
GO:0030904 {tab} NA    {tab} 0.05  {tab} {tab} +1
GO:0008623 {tab} NA    {tab} 0.05  {tab} {tab} -1
GO:0046540 {tab} NA    {tab} 0.01  {tab} {tab} -1
...

Software/EnrichmentMap/UserManual/GenericResultsFiles (last edited 2010-03-25 18:56:02 by OliverStueker)

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