#acl All:read = OICR Cancer Stem Cell Program = == Experimental Design and Statistical Analysis == [[ChangjiangXu |Changjiang Xu]], [[GaryBader | Gary Bader]] ------ * OICR CSC Projects: Biostatistical Part (PI's name and/or project title listed below) * Aaron Schimmer * [[CancerStemCellProject/ChangjiangXu/AS02 | AS02 (Some points in the reviewed paper to be addressed): Association between ClpP expression and known AML mutations]] * [[CancerStemCellProject/ChangjiangXu/AS03_06 | AS03-06: Gene expression of protein import / the cardiolipin pathway / HTRA2 / MTCH2 in AMLs]] * [[CancerStemCellProject/ChangjiangXu/AS04_import_proteins_Danny | AS04_import_proteins_Danny: Gene expression of the mitochondrial import proteins MPPbeta in AML and HSC]] * Laurie Ailles * [[CancerStemCellProject/ChangjiangXu/LA02 | LA02 (LA02_CAF_ovarian_Laurie): Crosstalk between CAFs and ovarian cancer cells]] 1. [[CancerStemCellProject/ChangjiangXu/LA02#Differential_Expression_Analysis | Differential expression analysis]] 1. [[CancerStemCellProject/ChangjiangXu/LA02#TCGA_OV_Data_Analysis | TCGA OV data analysis]] * [[CancerStemCellProject/ChangjiangXu/LA03 | LA03 (LA03_part3_CAF_H&N_Keira): Crosstalk between CAFs and epithelial cancer cells in the Head and Neck cancer]] * Peter Dirks * [[CancerStemCellProject/ChangjiangXu/PD03 | PD03: Role of dopamine D4 receptor in glioblastoma stem cells]] 1. [[CancerStemCellProject/ChangjiangXu/PD03#PD03-part2:_Normal_Cells | Part2: normal cells]] 1. [[CancerStemCellProject/ChangjiangXu/PD03#PD03-part3:_TCGA_Glioblastoma_Data_Analysis | Part3: TCGA GBM data analysis]] 1. [[CancerStemCellProject/ChangjiangXu/PD03#Comparison_of_TCGA_GBM_Affymetrix_and_RNAseq_Data | Comparison of TCGA GBM Affymetrix and RNAseq data]] * John Dick * HALT02/JAK2 1. [[CancerStemCellProject/ChangjiangXu/HALT02_SRC | Differential expression analysis of SRC high vs low (negative) sub-populations]] 1. [[CancerStemCellProject/ChangjiangXu/HALT02_JAK2 | Comparison of the pathways for XG-R/PF-R, XG-NR/PF-NR, and XG-R/PF-NR]] * [[CancerStemCellProject/ChangjiangXu/JD12_relapsedAML | JD12_relapsedAML_Liran: Clustering and pathway analysis of patients with relapsed AML]] * [[CancerStemCellProject/ChangjiangXu/JD13_Itgb7_Peter | JD13_Itgb7_Peter: ITGb7+ and ITGb7– hematopoietic stem cells]] * [[CancerStemCellProject/ChangjiangXu/JD14_Sasan_FL_BM | JD14_Sasan_FL_BM: Differential expression analysis and gene-set enrichment analysis on hematopoietic stem cells derived from bone marrow or fetal liver]] * Bret Pearson * [[CancerStemCellProject/ChangjiangXu/BP03 | BP03: Spatial Organization of the planarian transcriptome]] * [[CancerStemCellProject/ChangjiangXu/BP04 | BP04: Mechanisms driving asymmetric cell fate outcomes in planarian adult stem cell lineages]] * [[CancerStemCellProject/ChangjiangXu/CG04 | Cyndi Guidos]] * [[CancerStemCellProject/ChangjiangXu/oPOSSUM | oPOSSUM]] * [[CSCBiostatService | Biostatistics service]] 1. [[CSCBiostatService/AffymetrixDataAnalysis | Affymetrix microarray data analysis]] 1. [[CSCBiostatService/IlluminaChipDataAnalysis | Illumina’s BeadChip microarray data analysis]] 1. [[CSCBiostatService/RNAseqDataAnalysis | RNA-seq data analysis]] 1. [[CSCBiostatService/flowCytometryDataAnalysis | Flow cytometry data analysis]] 1. [[CSCBiostatService/survivalAnalysis | Survival analysis]] ----