Chris's Log Book
[:/ToDo:To Dos]
[:/LiteratureReview: Literature Review]
- [:/Statistical Test: Statistical Test]
- [:/thesis: Thesis]
HOLDING AREA - To be organized....
[http://developer.apple.com/internet/opensource/osdb.html Installing mySQL on Mac]
[http://www.truerwords.net/3556 Installing Perl's DBD::mysql on Mac]
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein–Protein Interactions
PIDD: database for Protein Inter-atomic Distance Distributions
FireDB—a database of functionally important residues from proteins of known structure
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways
- Contain HMM
MMDB: annotating protein sequences with Entrez's 3D-structure database
The SUPERFAMILY database in 2007: families and functions
- HMM based on structures
PEDANT genome database: 10 years online
DOMINO: a database of domain–peptide interactions
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease
DisProt: the Database of Disordered Proteins
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
HHsenser: exhaustive transitive profile search using HMM–HMM comparison