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Chris's Log Book

 * [:/ToDo:To Dos]
 * [:/LiteratureReview: Literature Review]
 * [:/Statistical Test: Statistical Test]
 * [:/References: References]
 * [:/thesis: Thesis]
  * Protein Complex Evolution
   * Cell Polarity
    * [:/TightJunction: Tight Junction]
  * [:/Phosphorylation: Phosphorylation]

'''HOLDING AREA''' - To be organized....

[http://developer.apple.com/internet/opensource/osdb.html Installing mySQL on Mac]

[http://www.truerwords.net/3556 Installing Perl's DBD::mysql on Mac]

SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein–Protein Interactions

PIDD: database for Protein Inter-atomic Distance Distributions

FireDB—a database of functionally important residues from proteins of known structure

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways
 * Contain HMM 

MMDB: annotating protein sequences with Entrez's 3D-structure database

The SUPERFAMILY database in 2007: families and functions
 * HMM based on structures

PEDANT genome database: 10 years online

DOMINO: a database of domain–peptide interactions

PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease

DisProt: the Database of Disordered Proteins

TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure

HHsenser: exhaustive transitive profile search using HMM–HMM comparison

[http://www.google.com/calendar/embed?src=h2hoq53lpig6gh8etg7ai1r558%40group.calendar.google.com&pvttk=c3e8bc89cf0a72313f0b5e5ee97c30f3 My Schedule]