#acl All:read
= Global proteomic profiling and enrichment maps of dilated cardiomyopathy =

This data is supplementary material for:

''Global proteomic profiling and enrichment maps of dilated cardiomyopathy''

Ruth Isserlin1,2,3, Daniele Merico1,2,3, and Andrew Emili1,2,3*

   1. Banting and Best Department of Medical Research, University of Toronto, 112 College Street, Toronto, Ontario, Canada, M5G 1L6
   1. The Donnelly Centre, Faculaty of Medicine University of Toronto, 160 College Street, Toronto, Ontario, Canada, M5S 3E1
   1. Department of Molecular Genetics, University of Toronto 

== R9C early-stage disease files ==
 * [[attachment:early_Stage_files.zip]] - compressed set of files containing:
    1. Protein expression file - early_stage_expression_file.txt
    1. Ranked protein expression file - early_stage_ranked_file.rnk
    1. GSEA enrichment results using ranked protein expression file. (upregulated) - gsea_early_stage_results_upregulated.xls
    1. GSEA enrichment results using ranked protein expression file. (down regulated)- gsea_early_stage_results_downregulated.xls
    1. BiNGO enrichment results using all significantly (p-value < 0.05) over-expressed proteins. - early_stage_bingo_results.bgo
    1. DAVID enrichment results using all significantly (p-value < 0.05) over-expressed proteins. - early_stage_David_results.txt
 * Additionally you can also download entire GSEA results - [[attachment:early_stage_complete_gsea_results.zip]]

== R9C mid-stage disease files ==
 * [[attachment:mid_Stage_files.zip]] - compressed set of files containing:
    1. Protein expression file - mid_stage_expression_file.txt
    1. Ranked protein expression file - mid_stage_ranked_file.rnk
    1. GSEA enrichment results using ranked protein expression file. (upregulated) - gsea_mid_stage_results_upregulated.xls
    1. GSEA enrichment results using ranked protein expression file. (down regulated)- gsea_mid_stage_results_downregulate.xls
    1. BiNGO enrichment results using all significantly (p-value < 0.05) over-expressed proteins. - mid_stage_bingo_results.bgo
    1. DAVID enrichment results using all significantly (p-value < 0.05) over-expressed proteins. - mid_stage_David_results.txt
 * Additionally you can also download entire GSEA results - [[attachment:mid_stage_complete_gsea_results.zip]]

== Supplementary files ==
 1. GMT file used in above GSEA analysis - [[attachment:Mouse_GO_AllPathways_with_GO_iez_symbol.gmt.zip]]