#acl All:read == Current Members == ||Bader Lab |||||||| || || {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Associate Professor ||Apr.2006 || || ||Post docs |||||||| || || {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011 ||Cancer genomics || || {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics || || {{attachment:Florence.jpg}} ||Florence Cavalli ||with Michael Taylor ||Dec.2011 ||Cancer genomics || || {{attachment:Andrea.jpg}} ||Andrea Uetrecht ||with Jason Moffat ||Feb.2012 ||Protein interactions || || {{attachment:Deena.jpg|alt text|width="150"}} ||Deena Gendoo ||with Annie Huang ||Sept. 2012 ||Cancer genomics on Pediatric Brain Tumours || || {{attachment:RonAmmar/ron_profile.jpg|Ron|width="250"}} ||[[RonAmmar|Ron Ammar]] || ||Aug. 2013 ||MedSavant and The Sick Kids Genome Clinic || || {{attachment:mhelmy3.png}} ||[[MohamedHelmy|Mohamed Helmy]] || ||Sep. 2013 || || ||Graduate Students |||||||| || || {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction || || {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2010 ||Network alignment || || {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011 ||Cancer genomics of medulloblastoma || || {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised with [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s lab ||Jan. 2012 ||Computational predictions of protein-protein interactions || || {{attachment:omarwagih.jpg}} ||[[OmarWagih|Omar Wagih]] ||Computer Science ||Sept.2012 ||Cancer genomics || || {{attachment:Pegah.png||height="200px",width="239px"}} ||[[PegahKhosravi|Pegah Khosravi]] ||Bioinformatics ||Oct.2012 ||- || || {{attachment:asha.JPG}} ||[[AshaRostamianfar|Asha Rostamianfar]] ||Computer Science ||Sept.2013 ||- || || {{attachment:Patryk.jpg}} ||[[Patryk Skowron|Patryk Skowron]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Sept.2013 ||Cancer genomics of medulloblastoma || || {{attachment:Ming.jpg}} ||[[LucasHu|Lucas Hu]] ||Molecular of Genetics (co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]]) ||Sept.2013 ||Proteomics || ||Undergraduate Students |||||||| || || {{attachment:victor.jpg}} ||[[kofiav|Victor Kofia]] ||University of Toronto ||May-Aug 2013, Sep 2013- present ||Co-Authorship Cytoscape App, Enrichment Map App || || {{attachment:arkady.jpg}} || Arkady Arkhangorodsky || University of Toronto || July-Aug 2013, June 2014 - present ||High dimensional data visualization|| ||Research Staff |||||||| || || {{attachment:Veronique.png}} ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells || || {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||Active cell map <
>(Co-supervised with Andrew Emili) || || {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Research Associate ||May.2014||Medical Decision Making || ||Software Developers |||||||| || || {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||[[http://www.genemania.org/|GeneMANIA]] || || {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || || {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || || {{attachment:qrcode.png}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||[[http://www.genemania.org/|GeneMANIA]] || || {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||[[http://www.pathwaycommons.org|Pathway Commons]]<
>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] || || {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||Feb.2009 ||||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]]<
> [[http://baderlab.org/Genemania/BuildProcess|Build Process]] <
> [[http://www.genemania.org/|GeneMANIA]] || ||Visiting Scientists |||||||| || || {{attachment:Carolyn.jpg|alt text|width="150"}} ||Carolyn Cummins ||Visiting Scientist (Assistant Professor of Pharmacy) ||Nov 2013 ||Pathway and RNA-seq analysis || ||[[Members/Photos|More Photos]] || == Past Members == ||Post Docs |||||||| || || {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007-Mar.2012 ||Chemical genomics in yeast || || {{attachment:xiaofeng.jpeg}} ||Xiaofeng Xin || ||Jul.2010-Nov.2011 ||Protein-protein interactions in C. elegans || || {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009-Nov.2011 ||Multiple perturbations in yeast || || {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) ||Active cell map || || {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map || || {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks || ||Graduate Students |||||||| || || {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity || || {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006-Oct.2012 ||Genetic interactions in yeast || || {{attachment:MohammedAlshalalfa.jpg}} ||[[Mohammed Alshalalfa]] ||Visiting student from University of Calgary ||May.2011-Dec 2011 ||Master regulators identification using network biology || || {{attachment:sambourg.png}} ||[[LaureSambourg|Laure Sambourg]] ||[[http://www-timc.imag.fr/?lang=en|Laboratoire TIMC-IMAG]], France, Visiting student ||June.2011-Dec.2011 ||Cancer interactome and alternative splicing || || {{attachment:Chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007-Aug.2011 ||Network evolution || || {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008-Sept.2010 ||Quantitative interaction prediction || || {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007-2011 ||Protein complex detection from networks || ||Software Engineers |||||||| || || {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||[[http://www.genemania.org/|GeneMANIA]] || || {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || || {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||Integrative Biology of Yeast || || {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||Protein interaction prediction || || {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||Integrative Biology of Yeast || ||Project Manager |||||||| || || {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] || ||Quality Assurance |||||||| || || {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||Lab Technicians |||||||| || || {{attachment:Jun.jpg}} ||Jun Gu ||Technician (co-supervised with [[http://www.thedonnellycentre.utoronto.ca/members/sachdev_sidhu.html|Dev Sidhu]]) ||Dec.2010 ||Protein interaction screening || || {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening || ||Undergraduate Students |||||||| || || ||Diana Nicholls ||University of Toronto ||June-Aug 2013 ||Pathguide.org || || ||Soumil Narayan ||McMaster University ||May-Aug 2013 ||Cancer genomics analysis || || {{attachment:Alvin.png|xx.jpg|height="116",width="116"}} ||Alvin Leung ||Mcgill University ||May-Sep 2013 ||Cytoscape || || {{attachment:yue.jpg}} ||Yue Dong ||University of Toronto ||Dec.2011 - Sep.2013 ||Cytoscape || || {{attachment:hussam.jpg|xx.jpg|height="116",width="116"}} ||Hussam Kaka ||University of Toronto ||Sep. 2012 - Aug.2013 ||GeneMANIA || || {{attachment:luke.jpg}} ||Luke Chang ||Summer Researcher ||June-Aug 2013 ||GeneMANIA || || {{attachment:xx.jpg}} ||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010-Aug 2012 ||WW domain prediction, PDZ domain prediction || || {{attachment:adrian.jpg}} ||Adrian Zhu || ||Jan. 2011 ||||[[http://www.genemania.org/|GeneMANIA]] || || {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis || || {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || || {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || || {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || || {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || || {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || || {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis || || {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains || || {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<
>Apr-Aug.2007 ||Colorectal Cancer biomarkers || || {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction || || {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability || || {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers || || {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers || ||Project Students |||||||| || ||||Ruth Grace Wong <
> {{attachment:RuthGraceWong.jpg}} ||University of Western Ontario, Computational Biochemistry ||May-Aug 2014 ||MedSavant Pathway View Extension (Google Summer of code 2014) || ||||Yue Dong ||University of Toronto ||May-Aug 2012 ||App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) || ||||Bimal Ramdoyal ||University of Toronto ||May-Aug 2011 ||Proteomics analysis (4th year project course) || ||||Marek Zaluski ||Concordia University, Montreal ||May-Aug 2011 ||HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) || ||||Yue Dong ||University of Toronto ||May-Aug 2011 ||3D Renderer for Cytoscape (Google Summer of Code 2011) || ||||Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||WordCloud Plugin for Cytoscape (Google Summer of Code 2010) || ||||Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) || ||||Maital Ashkenazi ||Hebrew University, Jerusalem ||May-Aug 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || ||||Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) || ||||Victoria Mui ||University of Toronto, Computer Science ||May-Aug 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) || ||Graduate Rotation Students |||||| || ||[[HuyNguyen|Huy Nguyen]] ||Molecular Genetics ||Nov.2012 ||Enrichment maps || ||Huayun Hou ||Molecular Genetics ||Oct.2012 ||Pathway analysis || ||Jochen Weile ||Molecular Genetics ||Sep.2011 ||Pathway analysis || ||Akiko Sekikawa ||Molecular Genetics ||Sep.2010 ||Protein interaction network evolution || ||Carl Song ||Molecular Genetics ||Dec.2009 ||Pathway analysis || ||Gavin Wilson ||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution || ||Brad Arshinoff ||Molecular Genetics ||Jan.2009 ||Analyzing yeast high content screening data || ||Devon Radford ||Molecular Genetics ||Nov.2008 ||Predicting genetic interactions in yeast from mutations in cell structure || ||Ron Ammar ||Molecular Genetics ||Oct.2008 ||Predicting active biomolecules in yeast || ||Adrian Verster ||Molecular Genetics ||Sept.2008 ||Predicting trigenic synthetic lethalic in yeast || ||Harshika Seepany ||Medical Genetics ||Oct.2007 ||PDZ protein interaction specificity analysis || ||Shirley Hui ||Medical Genetics ||Mar.2007 ||Gene expression correlation analysis || ||Vuk Pavlovic ||Medical Genetics ||Feb.2007 ||Protein complex detection || ||Trevis Alleyne ||Medical Genetics ||Nov.2006 ||Protein interactions involving SH3 domains - specificity prediction || ||Graham Cromar ||Medical Genetics ||Oct.2006 ||Protein interactions involving SH3 domains - interaction prediction || ||Chris Tan ||Medical Genetics ||Sep.2006 ||Protein interactions involving SH3 domains - specificity analysis ||