Diff for "Members" - Bader Lab @ The University of Toronto

Differences between revisions 4 and 110 (spanning 106 versions)

Current Members

Bader Lab
	Gary Bader	Assistant Professor	Apr.2006
Post docs
	Iain Wallace	Co-supervised with Guri Giaever and Corey Nislow	Oct.2007	Chemical genomics in yeast
	Magali Michaut		Jan.2009	Multiple perturbations in yeast
	Daniele Merico	Co-supervised with Andrew Emili	Jan.2009 (formerly visiting student since Nov.2007)	Active cell map
	Jüri Reimand		Jan.2011	Cancer genomics
Graduate Students
	Ron Ammar	Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab)	Jan.2009	Yeast chemical genomics & Drug target identification
	Anastasija Baryshnikova	Molecular Genetics (co-supervised with Charlie Boone)	May.2006	Genetic interactions in yeast
	Shirley Hui	Molecular Genetics	May.2007	Domain specificity
	Shobhit Jain	Computer Science	Sep.2008	Domain interaction prediction
	Vuk Pavlovic	Molecular Genetics	May.2007	Protein complex detection from networks
	Chris Tan	Molecular Genetics (co-supervised with Tony Pawson)	Jan.2007	Network evolution
	Xiaojian Shao	China Agricultural University, China, Visiting student	Sept.2008	Quantitative interaction prediction
	Brian Law	Computer Science	Sept.2010	Network alignment
Undergraduate Students
	Xiang Xing	University of Toronto	May 2010	WW domain prediction, PDZ domain prediction
	Adrian Zhu		Jan. 2011	GeneMANIA
Software Engineers
	Ruth Isserlin	Nov.2007	Active cell map (Co-supervised with Andrew Emili)
	Khalid Zhuberi	Jun.2008	GeneMANIA
	Christian Lopes	Sep.2008	GeneMANIA
	Jason Montojo	Sep.2008	GeneMANIA
	Max Franz	May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009)	GeneMANIA
	Igor Rodchenkov	Nov.2008	Pathway Commons BioPAX Cytoscape
	Harold Rodriguez	Systems Administrator & Build Process	Feb.2009	GeneMANIA
Lab Technicians
	Jun Gu	Technician (co-supervised with Dev Sidhu)	Dec.2010	Protein interaction screening
Research Associate
	Veronique Voisin	Research Associate	Jan.2011	Pathway Analysis of Cancer Stem Cells

More Photos

Past Members

Post Docs
	Oliver Stueker		Dec.2008-Apr.2010	Cancer Stem Cells / Active cell map
	David Gfeller		Feb.2008-Feb.2010	Specificity and robustness in protein interaction networks
Software Engineers
	Ovi Comes		May.2008-Jun.2010	GeneMANIA
	Rashad Badrawi		Aug.2008-Apr.2010	GeneMANIA/Pathway Commons
	Laetitia Morrison		Sep.2007-Dec.2009	Integrative Biology of Yeast
	Moyez Dharsee		Jan.2007-Oct.2008	Protein interaction prediction
	Michael Matan		Jan-Aug.2007	Integrative Biology of Yeast
Project Manager
	Sylva Donaldson	Project Manager, Coordinator of Training and Outreach	Jun.2008-Jun.2010	GeneMANIA
Quality Assurance
	Farzana Kazi	QA Analyst	Jan.2009-Jun.2010	GeneMANIA/Cytoscape/Pathway Commons
Lab Technicians
	Lianet Lopez	Technician (co-supervised with Charlie Boone)	Oct.2007-Jun.2008	Protein interaction screening
Undergraduate Students
	Ameen Modhafar	University of Waterloo Systems Design Engineering co-op student	Jan to Apr.2010	Yeast systems analysis
	Anson Maitland	University of Waterloo Mathematics co-op student	May to Aug.2009	GeneMANIA
	Quentin Shao	McMaster University Applied Mathematics co-op student	May to Aug.2009	GeneMANIA
	Michael Tsui	University of Toronto Bioinformatics	May to Aug.2009	GeneMANIA
	George Wright	McMaster University Biology and Pharmacology co-op student	May to Aug.2009	GeneMANIA
	Pauline Chao	University of Waterloo	Jan-May.2009	GeneMANIA
	Benjamin Elliott	University of Toronto Electrical Engineering	May-August.2008	Yeast systems analysis
	Ioana Ivan	University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier)	Sep.2006-Aug.2007	Membrane interactions with PDZ domains
	Kevin Ha	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Sep-Dec.2006, Apr-Aug.2007	Colorectal Cancer biomarkers
	Stacy Hung	Bioinformatics, UWaterloo	Apr-Aug.2007	Protein interaction prediction
	Natalie Yeung	University of Toronto Immunology, 4th year	Jan-July.2007	Cytoscape usability
	Aseel Al Dallal	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Jan-Apr.2007	Colorectal Cancer biomarkers
	Faisal Naqib	University of Waterloo Faculty of Math(co-supervised with Steve Gallinger)	May-Aug.2006	Colorectal Cancer biomarkers
Project Students
Layla Oesper		University of Wisconsin, Madison, WI	May-Aug 2010	Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)
Monica Raj		University of British Columbia	July.2007-April.2008	Predicting in vivo PDZ domain protein interactions (4th year research project)
Maital Ashkenazi		Hebrew University, Jerusalem	May-Aug 2007	Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)
Anna Rukosuyeva		University of Toronto, Computer Science	Sep.2007-Dec.2008	Viewing compound nodes in Cytoscape (4th year project course)
Victoria Mui		University of Toronto, Computer Science	May-Aug 2008	Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)

Graduate Rotation Students
Akiko Sekikawa	Molecular Genetics	Sep.2010	Protein interaction network evolution
Carl Song	Molecular Genetics	Dec.2009	Pathway analysis
Gavin Wilson	Molecular Genetics	Sep.2009	Protein interaction network evolution
Brad Arshinoff	Molecular Genetics	Jan.2009	Analyzing yeast high content screening data
Devon Radford	Molecular Genetics	Nov.2008	Predicting genetic interactions in yeast from mutations in cell structure
Ron Ammar	Molecular Genetics	Oct.2008	Predicting active biomolecules in yeast
Adrian Verster	Molecular Genetics	Sept.2008	Predicting trigenic synthetic lethalic in yeast
Harshika Seepany	Medical Genetics	Oct.2007	PDZ protein interaction specificity analysis
Shirley Hui	Medical Genetics	Mar.2007	Gene expression correlation analysis
Vuk Pavlovic	Medical Genetics	Feb.2007	Protein complex detection
Trevis Alleyne	Medical Genetics	Nov.2006	Protein interactions involving SH3 domains - specificity prediction
Graham Cromar	Medical Genetics	Oct.2006	Protein interactions involving SH3 domains - interaction prediction
Chris Tan	Medical Genetics	Sep.2006	Protein interactions involving SH3 domains - specificity analysis

-  ⇤ ← Revision 4 as of 2006-05-08 02:15:32 → 
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  Editor: GaryBader
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+   ← Revision 110 as of 2011-03-13 17:04:47 → ⇥
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-Deletions are marked like this.
+Additions are marked like this.
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- *[:GaryBader:Gary Bader] - Assistant Professor
 *[:FaisalNaqib:Faisal Naqib] - Undergraduate Summer Student (University of Waterloo)
+#acl All:read
== Current Members ==
||<class="table-header">Bader Lab ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || ||
||<class="table-header">Post docs ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast ||
||<style="text-align:center"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009 ||Multiple perturbations in yeast ||
||<style="text-align:center"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map ||
||<style="text-align:center"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] ||  || Jan.2011 || Cancer genomics ||
||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:Ron - Moose - 2.JPG|Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification ||
||<style="text-align:center"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast ||
||<style="text-align:center"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity ||
||<style="text-align:center"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction ||
||<style="text-align:center"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks ||
||<style="text-align:center"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution ||
||<style="text-align:center"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction ||
||<style="text-align:center"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2010 ||Network alignment ||
||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:xx.jpg}} ||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010 ||WW domain prediction, PDZ domain prediction ||
||<style="text-align:center"> ||Adrian Zhu || ||Jan. 2011 ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] ||
||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align:center">Active cell map <<BR>>(Co-supervised with Andrew Emili) ||
||<style="text-align:center"> {{attachment:khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align:center">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] ||
||<style="text-align:center"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||[[http://www.genemania.org/|GeneMANIA]] ||
||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:Jun.jpg}} ||Jun Gu ||Technician (co-supervised with [[http://www.thedonnellycentre.utoronto.ca/members/sachdev_sidhu.html|Dev Sidhu]]) ||Dec.2010 ||Protein interaction screening ||
||<class="table-header">Research Associate ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells ||
-Line 4:
+Line 35:
-Our lab started in April 2006, we are looking for new members. See ["Jobs"]
+||<class="table-header">[[Members/Photos|More Photos]] ||


== Past Members ==
||<class="table-header">Post Docs ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map ||
||<style="text-align:center"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks ||
||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<style="text-align:center"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align:center">Integrative Biology of Yeast ||
||<style="text-align:center"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||<style="text-align:center">Protein interaction prediction ||
||<style="text-align:center"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align:center">Integrative Biology of Yeast ||
||<class="table-header">Project Manager ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] ||
||<class="table-header">Quality Assurance ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening ||
||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align:center"> ||
||<style="text-align:center"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis ||
||<style="text-align:center"> {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align:center"> {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis ||
||<style="text-align:center"> {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains ||
||<style="text-align:center"> {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<<BR>>Apr-Aug.2007 ||Colorectal Cancer biomarkers ||
||<style="text-align:center"> {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction ||
||<style="text-align:center"> {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability ||
||<style="text-align:center"> {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers ||
||<style="text-align:center"> {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers ||
||<class="table-header">Project Students ||||||||<class="table-header" style="text-align:center"> ||
||||<style="text-align:center">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) ||
||||<style="text-align:center">Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) ||
||||<style="text-align:center">Maital Ashkenazi ||Hebrew University, Jerusalem ||May-Aug 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) ||
||||<style="text-align:center">Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) ||
||||<style="text-align:center">Victoria Mui ||University of Toronto, Computer Science ||May-Aug 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) ||


||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align:center"> ||
||Akiko Sekikawa ||Molecular Genetics ||Sep.2010 ||Protein interaction network evolution ||
||Carl Song ||Molecular Genetics ||Dec.2009 ||Pathway analysis ||
||Gavin Wilson ||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution ||
||Brad Arshinoff ||Molecular Genetics ||Jan.2009 ||Analyzing yeast high content screening data ||
||Devon Radford ||Molecular Genetics ||Nov.2008 ||Predicting genetic interactions in yeast from mutations in cell structure ||
||Ron Ammar ||Molecular Genetics ||Oct.2008 ||Predicting active biomolecules in yeast ||
||Adrian Verster ||Molecular Genetics ||Sept.2008 ||Predicting trigenic synthetic lethalic in yeast ||
||Harshika Seepany ||Medical Genetics ||Oct.2007 ||PDZ protein interaction specificity analysis ||
||Shirley Hui ||Medical Genetics ||Mar.2007 ||Gene expression correlation analysis ||
||Vuk Pavlovic ||Medical Genetics ||Feb.2007 ||Protein complex detection ||
||Trevis Alleyne ||Medical Genetics ||Nov.2006 ||Protein interactions involving SH3 domains - specificity prediction ||
||Graham Cromar ||Medical Genetics ||Oct.2006 ||Protein interactions involving SH3 domains - interaction prediction ||
||Chris Tan ||Medical Genetics ||Sep.2006 ||Protein interactions involving SH3 domains - specificity analysis ||