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NetMatch Options |
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Once networks and/or queries are loaded, these will be available through the NetMatch plug-in
when executed.
Several
options are be available:
- Graph
Properties:
- Checkbox
Labeled enables/disables nodes and edges labels usage (i.e. if
the graph has labels and the checkbox is disables it
will be treated as an unlabeled graph)
- Checkbox
Directed enables/disables edges direction for both query and target
network (i.e. if the graph is directed and the checkbox is disabled it
will be treated as an undirected graph)
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- Query
properties:
- In the box Query Properties
it is possible to select a query and optionally its node and edge
attributes (query and attributes are loaded from Cytoscape or the query
drawing tool). Node and edge attributes are only searched if the Labeled
mode is set. When an incomplete set of attributes are loaded, NetMatch
considers the remaining nodes unlabeled. In particular, the option "Use
node IDs as attributes" uses the node IDs as
attributes
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Network properties:
- Select a target network in
the Network Properties box and its node and edge attributes (target and
attributes are loaded from Cytoscape). When an incomplete set of
attributes are loaded, NetMatch considers the remaining nodes unlabeled.
In particular, the option "Use
node IDs as attributes" takes as node attributes the node
IDs.
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- Options:
When query, network and attributes are
selected it is possible to start NetMatch. The possibilities are:
- Acquire Data:
When this button is pressed all open
networks and their attributes are loaded in NetMatch, even if they
are loaded in Cytoscape after NetMatch is started.
- Go:
Run the query.
- Reset:
Reset NetMatch interface. If there are
networks loaded in Cytoscape, they are automatically loaded.
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