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* 1) install R : * 2) install RStudio : |
* 1) install R (http://www.r-project.org/) * 2) install RStudio (http://www.rstudio.com/) * 3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/) |
Protocol
A to Z protocol to create an EnrichmentMap from gene expression data and using GSEA (Gene Set Enrichment Map)
Installation
How to preprocess the data using R
1) install R (http://www.r-project.org/)
2) install RStudio (http://www.rstudio.com/)
3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/)
How to preprocess the data using Excel
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map