601
Comment:
|
826
|
Deletions are marked like this. | Additions are marked like this. |
Line 4: | Line 4: |
== Installation == | == How to create a rank file == == How to create an expression file == == How to run GSEA == == How to create a map == == What is the next step, how to use the map == |
Line 7: | Line 11: |
== How to preprocess the data using Excel == === step1: installation |
Protocol
A to Z protocol to create an EnrichmentMap from gene expression data and using GSEA (Gene Set Enrichment Map)
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map
What is the next step, how to use the map
How to preprocess the data using R
How to preprocess the data using Excel
=== step1: installation
1) install R (http://www.r-project.org/)
2) install RStudio (http://www.rstudio.com/)
3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/)
How to preprocess the data using Excel
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map