826
Comment:
|
763
|
Deletions are marked like this. | Additions are marked like this. |
Line 3: | Line 3: |
* How to create a rank file * How to create an expression file * How to run GSEA * How to create a map * What is the next step, how to use the map * How to preprocess the data using R * How to preprocess the data using Excel === step1: installation === * 1) install R (http://www.r-project.org/) * 2) install RStudio (http://www.rstudio.com/) * 3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/) |
|
Line 9: | Line 23: |
== How to preprocess the data using R == == How to preprocess the data using Excel == === step1: installation * 1) install R (http://www.r-project.org/) * 2) install RStudio (http://www.rstudio.com/) * 3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/) == How to preprocess the data using Excel == == How to create a rank file == == How to create an expression file == == How to run GSEA == == How to create a map == == What is the next step, how to use the map == |
Protocol
A to Z protocol to create an EnrichmentMap from gene expression data and using GSEA (Gene Set Enrichment Map)
- How to create a rank file
- How to create an expression file
- How to run GSEA
- How to create a map
- What is the next step, how to use the map
- How to preprocess the data using R
- How to preprocess the data using Excel
step1: installation
1) install R (http://www.r-project.org/)
2) install RStudio (http://www.rstudio.com/)
3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/)
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map